PepDraw - App

Peptide Builder

Peptide Sequence

Enter single letter amino acid codes (A, G, L, F, etc.). Click in text to position cursor for insertion.

Add Amino Acids

Post-Translational Modifications

Cross-Links Beta

Both positions must be Cys (C). 3D bridge geometry is approximate.

Cyclic Peptide Beta Enable cyclization

Head-to-tail (N→C) only. Ring geometry is not reflected in 3D structures.

Terminus Selection

N-Terminus

C-Terminus

pH Environment

pH 7.0

★ Batch Processing — Plus+

Peptide Structure

Ready to visualize

Build your peptide sequence and click "Generate Visualization" to see the chemical structure

Generating structure...

Please wait while we render your peptide

Backbone

Sidechains

Color

Surface

Generating 3D structure…

Could not generate 3D structure for this sequence.

3D Viewer — Pro Feature

Generate interactive 3D conformers for any peptide sequence.

Upgrade to Pro

Predicted structures are for visualization only and may not reflect actual conformation. ESMFold works best with sequences similar to known proteins — random or heavily modified sequences fall back to RDKit conformer generation.

Customize Appearance

Stereochemistry Show Stereochemistry ★

Labels Show Amino Acid Labels

Atom Coloring CPK Color Monochrome

Rendering Style

Export Options

Format

Quality

★ Advanced Features Coming Soon - Learn More

Peptide Properties

Hydrophobicity Scale

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Structural Representations ℹ️

SMILES:


                                Generate a peptide to see SMILES

InChI:


                                Generate a peptide to see InChI

InChIKey:


                                Generate a peptide to see InChIKey